Mapping
========================================


.. contents:: Modules included in this section
   :local:
   :depth: 1


.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.bowtie2_builder

.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.bowtie2_mapper

.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.bowtie1_builder

.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.bowtie1_mapper

.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.bwa_builder

.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.bwa_mapper

.. automodule:: neatseq_flow_modules.mapping.STAR_mapper

.. automodule:: neatseq_flow_modules.mapping.STAR_builder

.. automodule:: neatseq_flow_modules.mapping.STAR_LoadRemoveGenome

.. automodule:: neatseq_flow_modules.main_NSF_classes.mapping.samtools

.. automodule:: neatseq_flow_modules.main_NSF_classes.Reports.Multiqc

.. automodule:: neatseq_flow_modules.Liron.RSEM_module.RSEM

.. automodule:: neatseq_flow_modules.mapping.htseq_count

.. automodule:: neatseq_flow_modules.mapping.RSEM_prep

.. automodule:: neatseq_flow_modules.mapping.RSEM_mapper