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RNA-Seq analysis for non-model organisms
RNA-Seq using a reference genome
Transcriptome assembly and annotation with Trinity
Microbiome analysis using QIIME
Microbiome analysis using QIIME2
Variant analysis using GATK
Microbe-Flow: a comprehensive workflow for bacterial genomics, pathogenomics and genomic epidemiology
ChIP-seq workflow
Shotgun Metagenomics
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